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update astafunk readme

official website

README file for AstaFunk

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    /README.astafunk.txt
method to test alignment

New options for the method to test alignment

Creating method to select hits for FASTA sequences

Creating method to test alignment method

Creating method to test alignment

tags for statistics

tags for statistics

Add synchronized to allow multi-thread sequence translation (RandomAcessFile)

Add synchronized to allow multi-thread sequence translation (RandomAcessFile)

Check null event list

Tags to compute Statistics

Fix Best Gene Hit to accept overlapped alignments from different HMMs

Test for null hitlist

test

method for as reference transcript printer

attribute for as reference transcript printer

test of as reference transcript printer

moved package

moved package

moved package

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moved package

moved package

moved package

moved package

moved package

moved package bug fix

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    /barna.astalavista/src/main/java/barna/astafunk/Tsearch.java