I'm annotating some filtered, sorted bam files with their index files and when I run:
flux-capacitor -p <parameter_file> -i <sample.bam> -o <output.gtf>
I get "You cannot specify a READ_Descriptor for BAM files".
I see this has been raised and apparently resolved in
It still seems to occur. I'm using Win 7 OS 64bit - flux-capacitor-1.5.2.
Any prompt help will be great!